PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G008700.4
Common NameB456_011G008700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 714aa    MW: 78311.5 Da    PI: 7.8543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G008700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-11666711447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         WT eE++ l+++ +++G+  Wk+I +      k+Rt  ++k++w+++
  Gorai.011G008700.4 666 WTHEEEQALIKGYREYGTQ-WKLILESYRdilKKRTQVDLKDKWRNL 711
                         *****************99.*************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.223658713IPR017930Myb domain
SMARTSM007170.0016662713IPR001005SANT/Myb domain
SuperFamilySSF466894.68E-11665711IPR009057Homeodomain-like
PfamPF139214.4E-9666712No hitNo description
CDDcd116604.83E-16666713No hitNo description
Gene3DG3DSA:1.10.10.603.2E-10666711IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MGDSFPLFND RDPAVLSTLK RYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST  60
VTDAVLDSLI LIENLDRRRG VLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFQRIWGL  120
RIKSLEESGK SDLISSELVQ WGTVIEAGLW DLETSQRLSS VNTRGKALLR IKGYLEEAFR  180
SMSPALSRLA SASTTEPTVD HAASANPHPS TDEGNMGNVV SASAEASPSP HPCADKGNVD  240
NVISSSAQVP SSPHPCTNKK KKIRRASFQA RHKPRPRCKQ PRGVVITDME EDQPLCTKNG  300
TPSSFEVNGC LQVASKTRSA ALLDGVTDSP SEALEVLESV ALVMAGKNFH PKGSVEDSNK  360
DKGDPTTSFY PTTHHCTEKG KQILMVNSQT SGNPNSSHRH CEGPAATADI EGYRTLSTPD  420
IDKLRDALTS SIADLTATVA DPLPKALEVA ATLVSFMEAA KSLSTDGAEG DVRKEKGVPA  480
APMNCNFEQA QAERRAPDKA IREDQDKMAR SVPASSVGHS VEPSQAKEGN ETFSRPKKVP  540
KRNLMKRNDA AHTHERRAPY EGIREDYNKV DGSVPAPSVN HTAEPSHSKE GNEAVIRPKK  600
VRKRSIMERN DTAHASEWED SIDGSDGGTS GCSNRCTLPS PKTNHVSPLK ESEPQKQKNR  660
RKTNWWTHEE EQALIKGYRE YGTQWKLILE SYRDILKKRT QVDLKDKWRN LSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454058.10.0PREDICTED: uncharacterized protein LOC105776112 isoform X5
TrEMBLA0A0D2UKE20.0A0A0D2UKE2_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-13TRF-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]